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1. You can launch applications on device boot using the Zebra tool StartupCtl: StartupCtl Support & Downloads | Zebra
2. If you have written the application yourself you should be able to use SHFullScreen (SHFullScreen (Windows CE 5.0) ) to hide the taskbar when the application is shown.
Thanks Darryn for replying. These comments helped me.
I need a help for MK500 barcode scanner Auto Trigger in the c# application. using EMDK 2.9 and Windows CE 5 device