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There's no easy or automatic way to do this at this moment.
The main difficulties, is that the jar library is only used as a reference and not compiled into your application, so there's not much that can be done from there.
The only option that I'd found so far is to manually set a constant with the version of the EMDK used to create the APK.
Not ideal and requires some manual editing, but it works.
That's what I'm currently doing but was hoping to have a more automatic solution.